EXPIRED – Imaging Scientist / ro-383

Location
CH-Basel/remote
Start
01.02.2022
End
31.12.2022
Workload
100 %
All-in / Hour
rate negotiable
Total Hours
1800

Deadline:

Deadline
EXPIRED

 

EXPIRED – Imaging Scientist / ro-383

Location
CH-Basel/remote
Workload
100 %

Start

01.02.2022

End

31.12.2022

DEADLINE

Deadline
EXPIRED

  • CH-Basel/remote
  • CH-Basel/remote01.02.202231.12.2022100 % 1800rate negotiableDeadline
    EXPIRED

For our customer located in Basel/Switzerland we are currently looking for a: Imaging Scientist (m/f/x)

Background:

 

Within the pathology chapter you will work in close collaboration with a highly dynamic team of pathologists, scientists, laboratory experts and scientific informatics specialists to implement and operationalize the digital pathology strategy.

This role requires a mix of IT and Life Sciences knowledge. The ideal candidate will have an IT background and education used in a life science context through experience. We are looking for candidates with strong experience in image processing, working experience with Python data analysis and visualization packages and with open source pipelining languages. Someone with experience with Digital Pathology or Spatial Omics would have a strong advantage.

General Information:

 

  • Start date: Feb 1st
  • Latest possible start date: April 1st
  • End date: 31.12.2022
  • Extension: possible
  • Workplace: Basel
  • Workload: 100%
  • Remote/Home Office: home office
  • Travel: no
  • Team: around 25 people plus matrix
  • Department: Pathology (PNBB)

Tasks & Responsibilities

  • Development of fit for purpose assays to quantify tissue biomarkers
  • Development and implementation of AI algorithms and models, and image analysis
  • Integration of data analysis and data visualization for scientific data related to the imaging analysis field
  • Integration of the image analysis pipeline in the overall Digital Pathology platform
  • Development of image acquisition protocols, workflow implementation and validation/quality control
  • Statistics, data mining
  • Document and record generated datasets according to FAIR (Findable, Accessible, Interoperable, Reusable) principles
  • Perform data curation tasks
  • Provide training, guidance and scientific support to scientists to increase effective usage of current systems

Must Haves

  • Degree in Computer Science, Informatics, Bioinformatics or Life Science
  • If Master: min 5 years of relevant experience in image processing; if PhD: min 2 years of experience
  • Proven experience with Python data analysis and visualization packages
  • Proficiency in open source pipelining languages ( e.g. snakemake, nextflow) required
  • Experience with open source web frameworks in either Python or Angular required.
  • Experience with Java, Matlab, HALO and Visiopharm would be considered a plus for the position

Nice to Haves

  • Experience in Digital Pathology or Spatial Omics field

Did we catch your interest?

The SimplyVision-Team is looking forward to receive your application (Word file is highly appreciated).

Kindly be informed that our customer is located in Switzerland. Therefore only applications from candidates within the EU or candidates holding Swiss work permission are required.

Preferred Interview Dates

  • CW3 & CW4

Tagged as: data analysis, java, matlab, nextflow, Python, snakemake, Visualization

Files must be less than 5 MB.
Allowed file types: txt rtf pdf doc docx.
If not - no problem - we'll organize one.
More optional Information about your way of finding us
You agree that your data will be used to process your request. Further information and revocation instructions can be found in the privacy policy.


You can apply to this job and others using your online resume. Click the link below to submit your online resume and email your application to this employer.

  • CH-Basel/remote
  • CH-Basel/remote01.02.202231.12.2022100 % 1800rate negotiableDeadline
    EXPIRED

For our customer located in Basel/Switzerland we are currently looking for a: Imaging Scientist (m/f/x)

Background:

 

Within the pathology chapter you will work in close collaboration with a highly dynamic team of pathologists, scientists, laboratory experts and scientific informatics specialists to implement and operationalize the digital pathology strategy.

This role requires a mix of IT and Life Sciences knowledge. The ideal candidate will have an IT background and education used in a life science context through experience. We are looking for candidates with strong experience in image processing, working experience with Python data analysis and visualization packages and with open source pipelining languages. Someone with experience with Digital Pathology or Spatial Omics would have a strong advantage.

General Information:

 

  • Start date: Feb 1st
  • Latest possible start date: April 1st
  • End date: 31.12.2022
  • Extension: possible
  • Workplace: Basel
  • Workload: 100%
  • Remote/Home Office: home office
  • Travel: no
  • Team: around 25 people plus matrix
  • Department: Pathology (PNBB)

Tasks & Responsibilities

  • Development of fit for purpose assays to quantify tissue biomarkers
  • Development and implementation of AI algorithms and models, and image analysis
  • Integration of data analysis and data visualization for scientific data related to the imaging analysis field
  • Integration of the image analysis pipeline in the overall Digital Pathology platform
  • Development of image acquisition protocols, workflow implementation and validation/quality control
  • Statistics, data mining
  • Document and record generated datasets according to FAIR (Findable, Accessible, Interoperable, Reusable) principles
  • Perform data curation tasks
  • Provide training, guidance and scientific support to scientists to increase effective usage of current systems

Must Haves

  • Degree in Computer Science, Informatics, Bioinformatics or Life Science
  • If Master: min 5 years of relevant experience in image processing; if PhD: min 2 years of experience
  • Proven experience with Python data analysis and visualization packages
  • Proficiency in open source pipelining languages ( e.g. snakemake, nextflow) required
  • Experience with open source web frameworks in either Python or Angular required.
  • Experience with Java, Matlab, HALO and Visiopharm would be considered a plus for the position

Nice to Haves

  • Experience in Digital Pathology or Spatial Omics field

Did we catch your interest?

The SimplyVision-Team is looking forward to receive your application (Word file is highly appreciated).

Kindly be informed that our customer is located in Switzerland. Therefore only applications from candidates within the EU or candidates holding Swiss work permission are required.

Preferred Interview Dates

  • CW3 & CW4

Tagged as: data analysis, java, matlab, nextflow, Python, snakemake, Visualization

Files must be less than 5 MB.
Allowed file types: txt rtf pdf doc docx.
If not - no problem - we'll organize one.
More optional Information about your way of finding us
You agree that your data will be used to process your request. Further information and revocation instructions can be found in the privacy policy.


You can apply to this job and others using your online resume. Click the link below to submit your online resume and email your application to this employer.

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